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R Error In Gzfile(file, "rb") : Cannot Open The Connection


Type 'license()' or 'licence()' for distribution details. Build me a Brick Wall! Go Live... On December 31, 2014 8:22:43 PM PST, John Sorkin <[hidden email]> wrote: >David, >I checked getwd() >and tried to save to the directory. http://haywirerobotics.com/cannot-open/fatal-error-c1083-cannot-open-include-file-39-thread-39-no-such-file-or-directory.html

trouble installing affycoretools for R 3.0 Hello, I installed R 3.0 today, I've been having the worst time getting all my needed packages l... Good practice is to use a directory in your user-space such as a subdirectory of Documents as indicated by Mr. You may want to read the help pages for: ?normalizePath ?getwd > Can someone let me know why this happens? > > > I am running under Windows 7, Rstudio > Then, go to the directory in linux and observe its owner by ls -l. http://stackoverflow.com/questions/15796791/loading-file-into-r

R Error In Gzfile(file, "rb") : Cannot Open The Connection

setRepositories() --- Please select repositories for use in this session --- 1: + CRAN 2: BioC software 3: BioC annotation 4: BioC experiment 5: BioC extra 6: CRAN (extras) 7: Omegahat If you are using are RStudio, it is relatively simple do this under the "Session/Set Working Directory" menu choices. The issue was the the files on the disk had extension abc.RData but the code modelAbc <- readRDS(file="abc.Rdata"). Why is the reduction of sugars more efficient in basic solutions than in acidic ones?

But when I try to use library(affy), I got this m... Thanks a lot! If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message. ______________________________________________ [hidden email] mailing list -- To UNSUBSCRIBE and Cannot Open Compressed File '.httr-oauth', Probable Reason 'permission Denied' You signed out in another tab or window.

Glassmapper fields displaying null despite correct item ID Would we find alien music meaningful? Artur Veloso > source("http://bioconductor.org/biocLite.R") > biocLite("GOstats") Running biocinstall version 2.2.9 with R version 2.7.0 Your version of R requires version 2.2 of BioConductor. Join them; it only takes a minute: Sign up Cannot open compressed file when installing R packages up vote 1 down vote favorite 1 This problem recently came up when I http://stackoverflow.com/questions/15363076/error-in-gzfilefile-wb-cannot-open-the-connection-or-compressed-file I am using R3...

Is it anti-pattern if a class property creates and returns a new instance of a class? Cannot Open Compressed File Probable Reason 'permission Denied' I followed the instructions on http://www.biocon... R version 3.2.2 (2015-08-14) -- "Fire Safety" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin13.4.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. Mimsy were the Borogoves - why is "mimsy" an adjective?

R Warning In Install.packages Cannot Open Compressed File

update: In some windows environments even your usb-stick might be protected from read-write by the R. page Error in file(con, “r”) : cannot open the connection Using R 3.2.2 in Windows 8.1, I'm trying to import a qiime otu table file, using this code: biom... R Error In Gzfile(file, "rb") : Cannot Open The Connection Use this instead (or explicitly state the path as you found out): a <- 1:10 save(a, file = "Data.Rdata") rm(a) load("Data.Rdata") share|improve this answer edited Apr 3 '13 at 21:59 answered R Error In Gzfile(file, "wb") : Cannot Open The Connection Problem with affy I have just updated affy dev package to 1.4.22.

Date Votes 2 comments 2 Hi, I believe the issue here is because you are attempting to use the CRAN extra repository, which is primarily intended for Windows-only packages. have a peek at these guys Why is (a % 256) different than (a & 0xFF)? Browse other questions tagged r install package cran or ask your own question. I live in Singapore, and the local R mirror here has been having problems for a while. –Tim Biegeleisen Jun 18 '15 at 1:11 add a comment| active oldest votes Know Cannot Open Compressed File Description

People this works > a <- 1:10 > getwd() [1] "C:/Users/saramachandran/Documents" > save(a,file="Documents/sai.R") Error in gzfile(file, "wb") : cannot open the connection In addition: Warning message: In gzfile(file, "wb") : cannot This is my pillow Blender add rough/random surface Teenage daughter refusing to go to school "Carrie has arrived at the airport for two hours." - Is this sentence grammatically correct? Best,Kevin Kevin Ushey August 01, 2016 16:37 0 votes Share Facebook Twitter LinkedIn Google+ Permalink Powered by Zendesk Support Submit a request Sign in Community Topics Posts New post Post 2 check over here If you're trying to save your document in a place where it's not in your current working directory, it will throw you this error.

If you wanted to reduce the number of places for libraries you can use the .libPaths function for setting the values. Error In Gzfile(file, Mode) : Cannot Open The Connection Does anyone > have any idea what I could be doing wrong? > > Thanks a lot! > Artur Veloso > >> source("http://bioconductor.org/biocLite.R") >> biocLite("GOstats") > Running biocinstall version 2.2.9 with Reverse a hexadecimal number in bash Wrong way on a bike lane?

If an image is rotated losslessly, why does the file size change?

See stackoverflow.com/questions/5963269/… for more tips on how to do this. –Paul Hiemstra Mar 12 '13 at 13:55 1 @AndrewMin I had the same problem, i realized that i wasn't saving The usual first attempt should be to run internet2.dll. Mimsy were the Borogoves - why is "mimsy" an adjective? Gzfile R Type 'q()' to quit R.

r install package cran share|improve this question edited Apr 16 at 20:58 MichaelChirico 11.8k32672 asked May 21 '13 at 22:33 user2407346 61113 add a comment| 3 Answers 3 active oldest votes warning in R Hey all, i am in window seven 64 bit and R 3.2.0, when i typed:   > source("http://biocondu... Why does the Minus World exist? this content What would be the consequences of a world that has only one dominant species of non-oceanic animal life?

Related 173How do I tar a directory of files and folders without including the directory itself?3unzip huge gz file in Java and performance6How to read gz files in Spark using wholeTextFiles0vba list marked files in dired in another buffer Product catalog How difficult is it to practically detect a forgery in a cryptosystem? Personal Open source Business Explore Sign up Sign in Pricing Blog Support Search GitHub This repository Watch 5 Star 26 Fork 7 eddelbuettel/bh Code Issues 1 Pull requests 0 Projects Not the answer you're looking for?

I think it depends on your wd. Terms Privacy Security Status Help You can't perform that action at this time. MacDonald ♦ 41k • written 8.5 years ago by Artur Veloso • 340 0 8.5 years ago by James W. Developer does not see priority in git Development Workflow being followed How to interpret torque spec ranges?

Could also be a Windows thing. –Tyler Rinker Apr 3 '13 at 20:04 I think you're on the right track with the file path issues. –joran Apr 3 '13 Powered by Biostar version 2.2.0 Traffic: 207 users visited in the last hour sign up / log in • about • faq • rss Ask Question Latest News Jobs Tutorials MacDonald ♦ 41k United States James W. In the Advanced system settings which will modify the environment variables TMP and TEMP C:\Users\DavidSmith\AppData\Local\Temp.Save them.

Professor of Medicine Chief, Biostatistics and Informatics University of Maryland School of Medicine Division of Gerontology and Geriatric Medicine Baltimore VA Medical Center 10 North Greene Street GRECC (BT/18/GR) Baltimore, MD Possibly also of importance is when I type: .libPaths() # [1] "D:/Rlibs" # [2] "C:/Users/L.Halsey/Documents/R/win-library/3.0" # [3] "C:/Users/L.Halsey/Documents/Documents/R-3.0.1/library" I have created several folders in an attempt to create one that I Think R was timing out before that last MB got in there.... How can I ask about the "winner" of an ongoing match?

Why does the Minus World exist? Date Votes 1 comment 0 This error: downloaded length 1077248 != reported length 2409111 indicates that (most likely) BH failed to download successfully. When does “haben” push “nicht” to the end of the sentence? Ideally you should use getwd() and setwd() locate and set the directory where your data and any saved files are placed.

Since you are >specifying an absolute path, R is not using your working directory. So you're trying to save to: C:/Users/saramachandran/Documents/Documents This doesn't exist.